Index

_

__get_stored_uns_data_and_prep_to_plot() (in module pyviper.pl)

A

aracne3_to_regulon() (in module pyviper.pp)

aREA() (in module pyviper.aREA)

C

clustermap() (in module pyviper.pl)

coTFs() (in module pyviper.load)

D

dendrogram() (in module pyviper.pl) (in module pyviper.tl)

diffmap() (in module pyviper.pl) dotplot() (in module pyviper.pl) draw_graph() (in module pyviper.pl)

E

embedding() (in module pyviper.pl)

embedding_density() (in module pyviper.pl)

F

find_top_mrs() (in module pyviper.tl)

H

heatmap() (in module pyviper.pl)

human2mouse() (in module pyviper.load)

M

matrixplot() (in module pyviper.pl) module pyviper.aREA pyviper.aREA.aREA_meta pyviper.config pyviper.Interactome pyviper.load pyviper.NaRnEA pyviper.NaRnEA.NaRnEA_meta pyviper.pl pyviper.pp pyviper.tl

msigdb_regulon() (in module pyviper.load) mwu() (in module pyviper.pp)

N

NaRnEA() (in module pyviper.NaRnEA)

nes_to_pval() (in module pyviper.pp)

O

oncomatch() (in module pyviper.tl)

P

path_enr() (in module pyviper.tl) pca() (in module pyviper.pl) (in module pyviper.tl) pyviper.aREA module pyviper.aREA.aREA_meta module pyviper.config module pyviper.Interactome module

pyviper.load module pyviper.NaRnEA module pyviper.NaRnEA.NaRnEA_meta module pyviper.pl module pyviper.pp module pyviper.tl module

R

rank_norm() (in module pyviper.pp) ranking() (in module pyviper.pl)

repr_metacells() (in module pyviper.pp) repr_subsample() (in module pyviper.pp)

S

set_regulators_filepath() (in module pyviper.config), [1] set_regulators_species_to_use() (in module pyviper.config), [1] spatial() (in module pyviper.pl)

spearman() (in module pyviper.pp) stacked_violin() (in module pyviper.pl) stouffer() (in module pyviper.pp)

T

TFs() (in module pyviper.load)

tracksplot() (in module pyviper.pl) tsne() (in module pyviper.pl)

U

umap() (in module pyviper.pl)

V

violin() (in module pyviper.pl)

viper_similarity() (in module pyviper.pp)