Index

_

__get_stored_uns_data_and_prep_to_plot() (in module pyviper.pl)

A

aracne3_to_regulon() (in module pyviper.pp)

C

clustermap() (in module pyviper.pl)

copy() (pyviper.Interactome method) coTFs() (in module pyviper.load)

D

dendrogram() (in module pyviper.pl) (in module pyviper.tl)

diffmap() (in module pyviper.pl) dotplot() (in module pyviper.pl) draw_graph() (in module pyviper.pl)

E

embedding() (in module pyviper.pl)

embedding_density() (in module pyviper.pl)

F

filter_regulators() (pyviper.Interactome method)

filter_targets() (pyviper.Interactome method) find_top_mrs() (in module pyviper.tl)

G

get_reg() (pyviper.Interactome method) get_reg_names() (pyviper.Interactome method)

get_regulon_from_loom() (pyviper.Interactome method) get_target_names() (pyviper.Interactome method)

H

heatmap() (in module pyviper.pl)

human2mouse() (in module pyviper.load)

I

ic_mat() (pyviper.Interactome method) icp_vec() (pyviper.Interactome method)

integrate() (pyviper.Interactome method) Interactome (class in pyviper)

M

matrixplot() (in module pyviper.pl) module pyviper.config pyviper.load pyviper.pl pyviper.pp pyviper.tl

mor_mat() (pyviper.Interactome method) msigdb_regulon() (in module pyviper.load) mwu() (in module pyviper.pp)

N

nes_to_pval() (in module pyviper.pp)

O

oncomatch() (in module pyviper.tl)

P

path_enr() (in module pyviper.tl) pca() (in module pyviper.pl) (in module pyviper.tl) prune() (pyviper.Interactome method) pyviper.config module pyviper.load module

pyviper.pl module pyviper.pp module pyviper.tl module

R

rank_norm() (in module pyviper.pp) ranking() (in module pyviper.pl)

repr_metacells() (in module pyviper.pp) repr_subsample() (in module pyviper.pp)

S

save() (pyviper.Interactome method) set_regulators_filepath() (in module pyviper.config), [1] set_regulators_species_to_use() (in module pyviper.config), [1] sig() (in module pyviper.load) size() (pyviper.Interactome method)

spatial() (in module pyviper.pl) spearman() (in module pyviper.pp) stacked_violin() (in module pyviper.pl) stouffer() (in module pyviper.pp) surf() (in module pyviper.load)

T

TFs() (in module pyviper.load) tracksplot() (in module pyviper.pl)

translate_regulators() (pyviper.Interactome method) translate_targets() (pyviper.Interactome method) tsne() (in module pyviper.pl)

U

umap() (in module pyviper.pl)

V

violin() (in module pyviper.pl)

viper_similarity() (in module pyviper.pp)